I think I used the same steps as most people - struggled and failed to do it myself. Googled and found a map file for the D9. Changed the name to reflect the 2600-PDL's USB PID, and then the paddles worked.
I doubt this is the answer you were looking for. I would like to go back at some point and try again to manually map it myself to understand it, but this got a working paddle which is all I was wanting to accomplish at the time. In retrospect, some of my trouble was probably not understanding some of terminology used - like MiSTer just says "sticks" which I was not initially getting was their reference to analog axis. Also, and I think this might have been my main problem, I was not setting the "peripheral ports" in the 7800 core - confusing as I don't think I had ever seen controller jacks refereed to as "peripheral ports".